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```
library(ComplexHeatmap)
library(circlize)
expr = readRDS(system.file(package = "ComplexHeatmap", "extdata", "gene_expression.rds"))
mat = as.matrix(expr[, grep("cell", colnames(expr))])
base_…
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Hi,
we recently noticed an uncommon behaviour of the UpSet Plot annotation. We solved the issue in our case but it could be beneficial for others as well.
Short summary: When scoping the upset…
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Hello everyone,
I tried to install irGSEA in Windows 10 system, but got the following error:
```
ERROR: dependencies 'AUCell', 'ComplexHeatmap', 'decoupleR', 'ggtree', 'Nebulosa', 'singscore' are…
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Your Rmd 7_Heatmap.Rmd contains the line:
`install_github("jokergoo/ComplexHeatmap")`
As this is needed only the first time you run it, you should comment it (`#`) so that it doesn't run every t…
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Will the Pycomplexheatmap support Kmeans clustering when using ClusterMapPlotter function. I just mean that first use Kmeans to form different goups, then run hierarchical clustering within each grou…
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Hi @raivokolde and @taunometsalu,
I've seen issue #19, instead make thinner cell widths another option could be make a multi-column annotation legend, some like `ComplexHeatmap` does... is there a…
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![图片](https://github.com/junjunlab/scRNAtoolVis/assets/90448222/47268256-be5a-484a-bc45-c1ff22c7c87e)
When I try to draw my heatmap, It turns out error. So I tried the example data, the same error …
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This prevents labels from overlapping but would require a bit of re-working how the `pheatmap` call is made.
https://jokergoo.github.io/ComplexHeatmap-reference/book/heatmap-annotations.html#mark-a…
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Dear Liana team and users,
Thanks for great package for being easy to use.
After subsetting the data based on the conditions, I want to plot the heatmap with desired order of X-axis by using this co…
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Hi Sam,
I generated a nice plot with the following code:
```
Clustered_DotPlot(vd1, features = top_markers,
exp_color_middle=0, exp_color_min = -1, colors_use_idents=pal, k=8)
```
![image]…