raivokolde pheatmap issues

raivokolde / pheatmap

Pretty heatmaps

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issues

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Can you extract the data matrix from pheatmap?

#102 vertesy opened 2 days ago
0
feature suggestion: plot only diagonal

#101 mauritsunkel opened 2 months ago
0
extract order of clustered column

#100 chrismahony opened 4 months ago
1
suggestion: add zlim

#99 shouyongpeng opened 4 months ago
0
Different cluster methods for rows and columns

#98 bpuladi opened 1 year ago
0
Changing annotation bar width with scaling factor.

#97 PStaus opened 1 year ago
0
not correctly plotting heatmap (only grey) when object called "as.double.factor" is in the global environment

#96 PStaus opened 1 year ago
0
Annotations upon kmeans_k usage

#95 KrebsLab opened 1 year ago
0
White lines in column annotation bars when heatmap is saved as tiff

#94 lucygarner opened 1 year ago
1
na_col doesn't work

#93 Ruiqi-CUB opened 1 year ago
1
Plotting Three Continuous Palettes

#92 atly2000 opened 1 year ago
0
Is there a paper to cite when using the pheatmap software?

#91 vagabond12 opened 1 year ago
1
Lines of dendrogram overlap in the column portion

#90 MauriAndresMU1313 opened 2 years ago
1
What pheatmap values represent ?

#89 TSolDour opened 2 years ago
0
when I focus on a cluster, I loose all the labels

#88 FrancescaLodi opened 2 years ago
0
annotations doesnt show and no error message

#87 mariamaseng opened 2 years ago
1
More specific error for unexpected data types when adding annotations

#86 Nelson-Gon opened 2 years ago
0
pheatmap is rendered in shiny only after the browser window was resized

#85 ismirsehregal opened 2 years ago
7
bold, italic

#84 byeongchangsim opened 2 years ago
2
A simple input

#83 Geize closed 2 years ago
1
Remove matrix

#82 lborcard opened 2 years ago
0
break (white) lines presenting in the columns and rows of the main heatmap plot with no NA data in matrix.

#81 WenxuLiu opened 2 years ago
4
input file for pheatmap

#80 bioinfonext opened 3 years ago
1
How to change the annotation bar position

#79 lincj1994 opened 3 years ago
0
Adjusting annotation column width

#78 mweberr opened 3 years ago
0
Hard-coded pdf inside pheatmap function causes issues and unwanted behavior in a knitting context +bugfix

#77 chrarnold opened 3 years ago
0
Fixed typo and improved wording in errors

#76 mmahmoudian opened 3 years ago
0
Handle cases where all annotation values are missing (i.e. NA).

#75 T-Heide opened 3 years ago
1
Any option for front color of rows/column labels?

#74 bbalog87 opened 3 years ago
2
Enable rastering of heatmap grob

#73 RoganGrant opened 4 years ago
0
spacing in annotate legends

#72 jrfrun opened 4 years ago
1
Get the after scale matrix

#71 ShaowenJ opened 4 years ago
1
Improvements for greater flexibility

#70 seirios opened 4 years ago
0
Unwanted behavior (BUG?) for `drop_levels=TRUE` when give `annotation_colors`

#69 epurdom opened 4 years ago
0
Annotation legend in multiple column format

#68 jgarces02 opened 4 years ago
1
Convenient coloring function for annotation cols/rows

#67 atakanekiz opened 4 years ago
1
Use circle for cells instead of square

#66 yangli-ai opened 4 years ago
0
Annotation_col Error - subscript out of bounds

#65 TimJCooper closed 4 years ago
4
Change text in annotation legend

#64 bakerwm opened 4 years ago
0
Add annotation_col to pheatmap

#63 emankhalaf opened 4 years ago
0
a big issue, 1000 gene, 300 sample, save as tiff, no color bar label, even with mar? why

#62 worker000000 opened 4 years ago
0
BUG: annotation_col and annotation_row have problems with DataFrame (S4Vectors)

#61 kmpf opened 4 years ago
0
Feature request: legend_font_size and subtitle.

#60 endrebak closed 4 years ago
1
Annotations for continuous scale data

#59 raunakms opened 4 years ago
0
change line width of dendrogram in pheatmap in R and add annotation _row

#58 Mohsin0911 opened 4 years ago
0
Error in hclust(d, method = method) : size cannot be NA nor exceed 65536 Calls: pheatmap -> cluster_mat -> hclust Execution halted

#57 hygine opened 5 years ago
0
Get the position of cells

#56 yangli-ai opened 5 years ago
0
bordor_color only works when providing filename

#55 joost823 opened 5 years ago
0
conda install -c bioconda r-pheatmap breaks rstudio

#54 Deena-B opened 5 years ago
3
Adjust the position of row annotations

#53 AmyLei96 opened 5 years ago
0