-
A cool feature to add to the package would be a **consensus heatmap** to visualize the consensus matrix, and you could add a covariate bar for cluster assignments.
For example, something similar to…
-
The multiple sequence alignment algorithm used in VSEARCH, the centre-star method, is rather simple. Consider implementing a better algorithm.
As a start, unaligned residues to the left of the firs…
-
Hi,
I would like to analyse multiple samples at once after demultiplexing. As input data I have one fasta file for each sample and each amplicon.
I'm not sure how to organise my data and I coul…
-
How does VSEARCH scores alignments on masked regions? I would expect it to discard hits between masked regions but, when clustering the sequences:
```
>HWI-ST397:349:C2YYMACXX:3:1102:20033:76341…
-
Hello,
I am interested in using scConsensus to combine supervised (Seurat label transfer) and unsupervised (Seurat graph-based clustering) results into a consensus clustering.
I have run into …
-
Hi mate!,
Love your program it has become my default to go for clustering and consensus.
I have been using it with the error below sporadically poping sometimes, but recently it is happening e…
-
We should check whether analogous parameters have same settings for all different methods creating representative spectra (e.g., bin width, mass error) and all search engines (mass error tolerance). O…
-
Hello,
I'm looking for the archetype models/consensus motifs in meme file format for version 1 but can't find it. Only version 2. Is there such a file somewhere?
-
every time my instance of NGSspeciesID runs, it will never finish the medakka polishing
2 consensus formed.
Saving spoa references to files: 945021|NC_016052.1/consensus_reference_X.fasta
running m…
-
ClusterEnsembles seems to not be available to download/install anymore. Find different package.