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ksahlin
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NGSpeciesID
Reference-free clustering and consensus forming of long-read amplicon sequencing
GNU General Public License v3.0
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add medaka_fastq option
#29
pecholleyn
closed
9 months ago
1
Repeating sequences in consensus
#28
josiah-liew
closed
7 months ago
2
add the top_reads option to use top scoring reads
#27
dwmccheyne
closed
12 months ago
1
medaka consensus qualities
#26
pecholleyn
closed
9 months ago
2
duplicate consensus sequences generated
#25
pecholleyn
closed
1 year ago
3
Clarification on NGSpID output
#24
omarkr8
opened
1 year ago
3
flexible clustering ?
#23
omarkr8
opened
1 year ago
1
Installation package conflicts
#22
kristycyw
opened
1 year ago
3
problem with medakka polishing
#21
jhgffhgjf
opened
2 years ago
10
UnboundLocalError: local variable 'polishing_pattern' referenced before assignment
#20
gabyrech
opened
2 years ago
5
How to find allelels
#19
Thomieh73
closed
2 years ago
6
feat: add Dockerfile
#18
Coppini
closed
2 years ago
2
Is there any specific reason to use the outdated medaka==0.11.5 and openblas==0.3.3 versions?
#17
Coppini
closed
2 years ago
1
feat: open/close files using 'with' context manager to avoid closing unopened files
#16
Coppini
closed
2 years ago
0
Error on polish_sequences when there are 0 centers
#15
Coppini
closed
2 years ago
0
Different output multiple samples (with for loop) and single sample
#14
LunavdL
opened
3 years ago
5
online access?
#13
atks
closed
3 years ago
7
Parasail build error
#12
atks
opened
3 years ago
7
Parasail building issues
#11
atks
closed
3 years ago
1
Problems installing NGSpeciesID
#10
PKuperus
opened
3 years ago
9
Conda install needs additional linux dependencies
#9
2tony2
closed
3 years ago
1
Update example workflow docs
#8
marisalim
closed
3 years ago
3
Allow IUPAC code in primer sequences
#7
jdalino
closed
3 years ago
2
samtool error [E::sam_parse1] query name too long
#6
lixiaopi1985
closed
3 years ago
2
consensus.sh error
#5
rkimoakbioinformatics
closed
3 years ago
2
Advice on tool for amplicon sequencing
#4
mlosilla
closed
3 years ago
3
Add workflow example
#3
marisalim
closed
3 years ago
0
Suggestion for [--rc_identity_threshold]
#2
edgardomortiz
opened
4 years ago
3
subprocess.CalledProcessError: Command 'medaka_consensus'
#1
ksahlin
closed
3 years ago
6