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Hi guys,
I'm been encountering an error in `genome/lib/perl/Genome/Model/Tools/CopyNumber/CnView.pm.R`
My process grinds to a halt with the following error:
```
Error in `[ :
replacement has 1 r…
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Hi,
I am trying to understand the information provided for the subclones in the ratio.txt file.
As I understand the Subclone_CN and Sublcone_Population correspond to the copy number and fraction of …
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#6055 Bug Report
### Affected tool(s) or class(es)
PostprocessGermlineCNVCalls
### Affected version(s)
4.1.8.1
### Description
Process of calling copy number segments and consolidate sam…
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## INSTALL
pangenie]$ cd build/
build]$ cmake ..
-- The C compiler identification is GNU 9.3.0
-- The CXX compiler identification is GNU 9.3.0
-- Detecting C compiler ABI info
-- Detecting C co…
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This is my first analysis and I ran FACETS on CT26 mouse tumors and Normal tissues (taken from literature). I obtain strange results because all the segments seems to be with 1 copy number (i expect…
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The SEG files generated by CNVkit could be used with GISTIC to identify recurring regions of gains and/or losses. However, GISTIC has been built with array CGH in mind, and so requires a so called "ma…
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Edit: despite the title this link list now contains all kinds of reference material for benchmarking/normal-filtering SV (including CNV) calls on a population level as well on single sample (mostly ce…
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Jeanette transferred the SAL item from instance [a1888067](https://searchworks-folio-dev.stanford.edu/view/1888067) to instance [a2010714](
https://searchworks-folio-dev.stanford.edu/view/2010714). `…
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I am trying to run the example data:
```R
data_dir