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I am trying to run cwltool on Mac that invokes a Docker container. When I specify the input to cwltool, in order for the container to access the input file cwltool is trying to create a symlink to the…
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[Common Workflow Language Viewer](https://view.commonwl.org/workflows) does not display the Graph of [user\_guide/1st\-tool\.cwl at gh\-pages · common\-workflow\-language/user\_guide](https://gith…
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**Snakemake version**
Note the Snakemake version for which you experience the bug.
Always make sure to try out the latest version before creating a new bug report.
5.15.0
**Describe the bug*…
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While testing the latest bcbio test CWL workflow (https://github.com/bcbio/test_bcbio_cwl) using the 1.0.1 release, I'm running into a permissions issue using a Docker container. Everything runs clean…
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Description: Deploy the latest stable release of SPS/Airflow onto the new EMIT venue using shared services defined in the unity-prod venue.
Dependencies:
o From CS: Management Console able to deplo…
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## Description
CWL Viewer cannot find a workflow in gitlab (self-hosted) repository.
## Expected Behavior
CWL Viewer shall find and parse the workflow correctly
## Actual Behavior
Erro…
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Inspiration:
- [gxargparse](https://github.com/erasche/gxargparse): creates 80% complete Galaxy tool description for programs that use the Python `argparse` library.
- The SBG program that did the sam…
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# Short description of the issue
In executing workflows, interTwin's WP6 is investigating interfaces to workflow composition and engines for workflow execution.
The Common Workflow Language ([CW…
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Have you considered how this project might interact with a [Common Workflow Language](http://commonwl.org) (CWL) [CommandLineTool](https://www.commonwl.org/v1.0/CommandLineTool.html) description?
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CWLS seems finicky about inviting. I'll constantly have times where it says "unable to inv". Then if I right click invite, it works. We tried multiple times to figure out what the issue is, but couldn…