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Hi,
I got an automatic email from @jimhester today about the change from `devtools::sesion_info()` to `sessioninfo::session_info()`. That's ok with me except for this one issue: `sessioninfo` uses …
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I have tried with no success to set up the local building test.
With circleci build, I do not seem to have gcc in the build environment. Here is an example with fastree recipe incremented by 1.
`…
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I've been trying to follow the workflow suggested [here](https://github.com/leekgroup/recount-contributions) for generating recount contributions, but I'm having an issue with the *prep_sample.R* scri…
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Does derfinder work exclusively with what is available in GenomeInfoDb?
I am trying to run analyzeChr() using a TxDb object that I built from a custom annotation GTF on which the alignments are base…
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We've only seen this error when running MatrixEQTL on the exon-exon splice junction matrix. All of the junctions are sorted
```
2018-01-25 14:16:09 running MatrixEQTL
Matching data files and lo…
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Hi!
I'm using ReCount2 and it's very helpful and easy to use, I really appreciate all the effort.
I was working with counts from SRP041538 and I realized that the file only contains 187 (of 189) …
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I've received feedback from users interested in being able to plot the base-level coverage for a set of samples in [recount2](https://jhubiostatistics.shinyapps.io/recount/).
One way of doing this …
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As seen at http://bioconductor.org/checkResults/devel/bioc-LATEST/bumphunter/zin1-checksrc.html today (June 27th), `species()` is defunct.
```
Error: Calling species() on a TxDb object is defunct. …
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It looks like the `tibble` package dependency is off somewhere - this was a fresh `derfinder` install where maybe 10 other packages were installed. manually installing the `tibble` package resolves th…
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UPDATE: The problem was when I had only one column. I got feedback correctly when I added my other datasets and tried `filterData`. **END UPDATE**
The example at [here](https://bioconductor.org/pac…