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I'm using the following version:
```
# MinPath (current version: 1.6)
```
Here's my command:
```
python ../MinPath.py -ec demo.ec -report demo.ec.minpath2 -details demo.ec.minpath.details2…
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From https://github.com/geneontology/go-ontology/pull/28636:
ERROR: http://purl.obolibrary.org/obo/GO_0016844 has a definition xref to an obsolete EC: "EC:4.3.3.2"
ERROR: http://purl.obolibrary.or…
sjm41 updated
2 months ago
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The third batch for the year has just been sent out to Dundee for screening against _P. falciparum_. This is the largest set we've sent this year and it contains a number of key compounds.
UPDATE 6…
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Also based on the KG2.6.1c (http://kg2canonicalized.rtx.ai:7474/browser/) that @amykglen just built, I found two problems that might be associated with Nodesynonymizer:
1) There are 35 duplicated p…
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Change the names of following peptides and CHEMs in the library (symbol, (new symbol), old name -> new name):
- [x] Az, Azide -> 4-azidobutyric acid
- [x] hxy, Hexynyl alcohol -> 5-hexyn-1-ol
- […
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The following are catalytic terms with only UM-BBD mapping (no EC/RHEA/MetaCyc/KEGG mapping) and have no annotations - see list here: https://docs.google.com/spreadsheets/d/18UFJV5IpOZJIcWyWMpWH8SkFUM…
sjm41 updated
3 months ago
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The following 96 MF terms each have multiple mappings to MetaCyc IDs.
Need to review, and tag with exact/broad/narrowMatch as appropriate, or remove any incorrect mappings.
- [x] GO:0019156 isoamy…
sjm41 updated
2 months ago
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Hi Adnan,
The two above compounds are both (1S,2S,3R,5S)-3,5-diammoniocyclohexane-1,2-diol with the InChIKey QOLDZWBHLDQIJR-FSIIMWSLSA-P
Please merge them.
Best wishes,
Kristian
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Hi all,
I am running a standard conformational analysis on butane-1,4-diol. I get this segmentation fault error
```
========================================
| Structure Crossing (G…
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Hi @balhoff
ChEBI terms used in the ontology should be limited to the pH7.3 list (see https://github.com/geneontology/go-ontology/issues/27012). Can you add a check for this?
Thanks, Pascale