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I am trying to use afqbrowser after succesfully running pyAFQ. When I run afqbrowser-assemble _path/to/pyAFQ/outputs_, I am using the 'tract_profiles.cvs' file in the afq output folder for the file pa…
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QSIprep includes boilerplate language for citation purposes. However, it seems it does not include the reconstruction respective pipelines citation/description. For example, running the `pyafq_tractom…
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* visualqc version: master
* Python version: 3.10
* Operating System: Centos7
### Description
Directionally encoded color maps would be helpful to assess correct ordering of the `b-vector` fil…
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```
+ singularity exec -e docker://brainlife/dipy:1.1.1 ./script.sh
usage: dipy_slr [-h] [--x0 str] [--rm_small_clusters int]
[--qbx_thr [int [int ...]]] [--num_threads int]
…
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**Is your feature request related to a problem? Please describe.**
PyGLTFLib usage in the codebase is lower than some optional dependencies, such as DIPY.
**Describe the solution you'd like**
Mak…
guaje updated
3 months ago
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Relies on #2 being done
Feel free to use the "convert to issue" feature on these tasks to break them out into dedicated discussions or track
separately.
- [ ] #15
- A sort of compatibility…
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## Description
The recent change of code for detecting unique values uses image shape for sampling random integers. This will throw an error when dealing with single channel 4D volumes since it would…
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I know that that script is not really used, but: I just ran 10 000 seeds:
- Dipy det = 45 secs
- Dipy prob = 43 secs
- Our dev script dev = 22.5 minutes
- Out dev script prob = 3.5 minutes
We…
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```
/usr/local/lib/python2.7/dist-packages/h5py/__init__.py:36: FutureWarning: Conversion of the second argument of issubdtype from `float` to `np.floating` is deprecated. In future, it will be treat…
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New AmyPET set-up requires manual installs of numpy and packaging librairies (fails when installing dipy?).