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### Description of the bug
Hello, I am a co-worker of olgabot and this issue is following [issue 196](https://github.com/nf-core/differentialabundance/issues/196). Running the nf-core/differentialabu…
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Hi there!
I'm testing the SCDC package to use in one of my analysis. I'm following the code from the vignette for bulk RNA analysis, however, I'm not being able to follow the code provided on the v…
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When trying to refer to ensembl transcripts we cannot find by version in the 20210129 data release.
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My dataset is annotated with human ENSEMBL IDs rather than gene symbols. I see in the human database, you have annotated gene symbols with ENSEMBL IDs.
Is it possible to use ENSEMBL IDs with CellC…
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Over in #1517, @christianhuber has got a PR for Gorilla (yay!). However, it's failing because the autogenerated file [`stdpopsim/catalog/ensembl_info.py`](https://github.com/popsim-consortium/stdpopsi…
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Ebsembl is problematic because each species has its own database with their own gene symbol name that needs to be manually identified. To be as smooth as homologene, I need to translate any possible N…
oganm updated
5 years ago
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See https://github.com/auerbachs/BMDExpress-2/wiki/Additional-Information#supported-microarrays
Current list should be:
|ID |…
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Hi, I am trying to run VEP, but I keep getting this issue (and output file is empty):
Can't call method "seq" on an undefined value at /home/WUR/steen179/miniforge3/share/ensembl-vep-111.0-0/Bio/E…
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Hi Richard,
How are things? We’ve been having good results with GenomeHubs so thanks very much for your help getting us to where we are.
We’ve hit a couple of issues lately which seems to be dow…
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We have `Bio.Entrez` for the NCBI Entrez Utilities, `Bio.TogoWS` for the Togo Web Services in Japan, etc. It would be great to have something similar for ENSEMBL.
See http://www.ensembl.org/info/docs…