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Hello @oftadehomid, I am still trying to use ETFL model of yeast. I find it is difficult to update the kcat for specific enzyme using the following code:
## yeast is the ETFL model
yeast.reactions.r…
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I would be nice to add UniProt as a source, especially the following items:
* protein sequence
* potentially isoforms/isoform annotations
* function
* activity regulation
* catalytic activi…
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I hope this message finds you well. First and foremost, I wanted to express my deepest gratitude for the incredible work you've put into developing [nombre del proyecto]. It's been an invaluable tool …
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**Affected BGC**
BGC0000844
**Describe the error**
Compared to BGC0000845, some of the biosynthetic enzymes are missing. The entry should be labelled as incomplete.
kblin updated
6 months ago
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When selecting enzymes from the DB (e.g. ABCB1) in the displayed list the bottom entry is "highlighted" by gray background color.
When selecting the top entry it is not clearly marked/highlighted exc…
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Comet supports a joint search for two enzymes and we have seen first interesting datasets
where this was used.
Should be relatively easy to implement and add a lot to flexibility. Great for making d…
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Curate localization and function of various TKL/TAL/DAS. Experiments conducted with Ogataea and Scheffersomyces.
Peroxisomes and peroxisomal transketolase and transaldolase enzymes are essential fo…
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Hi Jiayu,
I would like to express my appreciation for providing Phavip. However, I have some confusion about dataset splitting.
For datasets divided by similarity, first of all, thank you very muc…
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GO:0004164 diphthine synthase activity
is only present in Archae. For eukaroytic enzymes, please use the new term GO:0141133 diphthine methyl ester synthase activity (created today, it will take …
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Rebekah requested at the F2F: "Have a way similar to GlycoMaple to upload RNA seq data to focus on glycoenzymes that may be perturbed". This could mean a tool that allows to upload RNA seq data contai…