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**Aggregation, Interpretation, and Visualization of Gene Fusions in Cancer**
Many cancers are defined by the presence of recurrent, subtype-defining gene fusions. While there is an abundance of inf…
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Hi all,
I am using the latest fusioncatcher build from github for fusion prediction in a set of solid tumor samples. However, the results in the summary table include many fusions (classified as re…
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bash-4.2$ bio-fusion \
> -r1=$R1 \
> -r2=$R2 \
> -transcript=$transcript
I1104 12:57:44.433680 11841 main.go:336] Start reading geneDB
I1104 12:57:44.556241 11841 gene_db.go:310] Reading tran…
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Dear TomSkelly
I have predicted several fusion genes by cDNA_primer's fusion_finder.py program, Now I have got the fusion.gff and fusion.rep.fa files. Now I am wondering if it is possible to plot the …
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Hi Liz,
I'm using fusion_finder.py to identify a fusion gene in a allopolyploid,It is known that there are some fusion genes generated by homologous exchange in this allopolyploid. Can the fusion …
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Hi,
I am using FuSeq and got a list of genes. I want to visualize the fusion genes. is it possible to visualize the fusion genes from the results of the FuSeq.
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Hi,
The program successfully predicts the fusion gene in the ceil line but I would like to do some downstream analysis to compare the expression for this fusion gene between samples.
Are those ju…
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Hello, I have been using fusion_finder.py to find a fusion gene recently, however, there is an error, how can I fix it, thank you for your help
![Uploading 微信图片_20240303175001.png…]()
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Hello,
I get an issue when a try to run STAR-Fusion on Ubuntu 20.04.2 LTS :
`STAR-Fusion --CPU 24 --genome_lib_dir /tmpdata/Gene_Fusion/GRCh37_v19/GRCh37_gencode_v19_CTAT_lib_Mar012021.plug-n-p…
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When I look at PML on the mutations tab, PML-RARA fusions are annotated with CiVIC:
![image](https://user-images.githubusercontent.com/10508276/148285941-638fdec8-3238-4559-b1e8-d29f9d213728.png)
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