-
http://dx.doi.org/10.1371/journal.pone.0064832
PANDA (Passing Attributes between Networks for Data Assimilation) is a gene regulatory network inference method that uses message-passing to integrate mu…
-
https://doi.org/10.1101/262501
> Recent advances have enabled gene expression profiling of single cells at lower cost. As more data is produced there is an increasing need to integrate diverse data…
-
**Describe the problem concisely**.
Cell types are historically characterized by morphology and functional assays, but one of the main advantages of single-cell transcriptomics is their ability to d…
-
We need to pull a series of data to inform which genes to look for variants in.
There is a[ google doc here](https://docs.google.com/spreadsheets/d/1yX-5sfrC3vrahf4_k7-5rl4Oqzm853ollIMmUo1PTc0/edit…
-
Hi, I found a new error!
```
from LingerGRN.preprocess import *
Datadir='/home/baldini/sc/tbx1-2022/python_analysis/LINGER/'# This directory should be the same as Datadir defined in the above 'Down…
-
Structured data arises in a few of the domains discussed throughout the review. For example, CNNs perform tremendously for many tasks based on data from a regular graph like images ([subsection here](…
-
Identify at least 2, ideally 3 alternative methods that can use prior information (known targets of transcription factors) to predict TF activities on single-cell transcriptomic profiles.
These met…
-
Dear Murali Group,
I am currently writing my Bachelor Thesis on Gene Regulatory Network Inference methods. I was delighted to see your paper, tool, and thorough documentation for benchmarking diffe…
-
Hey, thanks for creating this package.
Understand that this is a highly experimental tool and bugs are to be expected. I tried replicating your code (using your data) but was given the following er…
-
http://doi.org/10.1101/069096 (also http://biorxiv.org/content/early/2016/08/11/069096 because the DOI isn't working for me)
**At a glance:** Uses a pretrained DeepSEA model (#13) to filter and group…