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Hi,
First thanks a lot for making this tool. It's super useful in my research on gut metagenomics.
While using it I came up with a few modifications that helped me and I thought could be benefic…
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Following the installation instructions:
```
conda create -y -n PhageBoost-env python=3.7
conda activate PhageBoost-env
pip install PhageBoost
```
Seems to successfully install. However, whe…
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**The bug**
The goal is to display a snapgene formated file in a browser. This does not appear to be working correctly. However, a genbank formatted vector of the same file works perfectly.
**Ex…
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Hi,
I am trying to convert my emapper annotations into genebank format using your tool. I have the following directories set up:
ANNOTATION/ FASTAPROT/ FASTNUCLEIC/ GENBANK/ GFF/ HITS/ ORTH…
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I'm sorry to have bothered you. My question is where can I download the analysis data, such as data/meta/tissue_mapping.tsv and data/meta/pig_tissue_colors.tsv.
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I tried to run snippy with the following genbank file:
https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/008/632/635/GCF_008632635.1_ASM863263v1/GCF_008632635.1_ASM863263v1_genomic.gbff.gz
However, the p…
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Hi, I came across your program and would like to use it to make nice alignments as in your paper. Installation via conda is fine and the test.pl works but when I try with my own data or your test dat…
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## Institute for Plant Genetic Resources
**GRSciColl URL**: https://www.gbif.org/grscicoll/institution/0e95d191-1d29-4c18-a4fb-0198fe64a913
**Code**: `IPGR`
**Homepage**: http://www.genebank.hit.bg/
*…
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Default blast tabular format output (outfmt 7) doesn't add taxon id for each blast hit. Taxon id is very important for downstream phylogenetic analysis. Indirect approach to add taxon id is to run t…
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The countfiles produced only contained a set of 55 genes, all of which seem to be tRNA and rRNA genes.
I tried aligning to genome files from GenBank and RefSeq, the results were the same with both al…