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Hello Pierre,
I was able to run Viral-Track successfully. However, I noticed that if you don't run the transcriptome assembly step `Viral_Track_cell_demultiplexing.R` crashes because the basic GTF …
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As mentioned in #4, this pipeline is supposed to target any distinct transcriptome sequence, meaning anything that has never been observed in any DNA before. (I don't think we need to worry about RNA …
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Hi,
I compare 2 assemblies (2.7 G) together but satsuma is running for more than 140 hours. By any chance, does anyone knows whether there is a way to split the data and run it on multiple nodes?
…
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Hi there, I have a duplicate file from the --keep duplicates flag. However, I'm confused about how to automate retrieving the contigs that map to multiple UCEs. Because I am working with very small ge…
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The same as the title.
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I am not sure, what is going on here. This is the first time I am trying to run hic-pro, so it might be a set-up issue?
I am running:
`/lustre/projects/dazzler/uelze/sw/HiC-Pro/bin/HiC-Pro -i /lus…
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Hi
I think there is an issue with running wrath from a given step (option -x)
# Example run
E.g. command:
This should start from outliers step and since -l was selected it should automatical…
gmkov updated
3 months ago
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Hi,
I have analyzed Hi-C data using HiC-Pro followed by FitHiChIP with recommended settings.
There is a large number of interactions, but at the step of merging adjacent loops, I am getting this err…
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I am very interested in using your platform to analyze WES data. The gatk website recommends using Hg19/b37 for WES but HG38. I noticed your reference database is for hg38? will the script work with H…
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Hi there,
I've been using DNAFeaturesViewer for visualizing domains on polypeptides. (Yes, not exactly it's the intended use case of DFV - but its seeing as FASTA & GFF files are used in both areas…