-
Hi, thanks for the great package! I am trying to run trajectory inference with the PAGA wrapper and a seurat object as described in the vignette.
when I run with my object, I get the error:
> fina…
-
Hello,
I am trying to run DAPC cross-validation using the xvalDapc() function. The data set I am working with is a matrix of 155 rows and ~98K columns representing SNP presence/absence data. Unfort…
-
PCA, one of the most common dimensionality reduction techniques might produce data representations that are inherently prone to unfairness. For example, an embedding of the data created by PCA might r…
-
Topic modeling is easy with Python and Gensim: http://radimrehurek.com/gensim/index.html
For example, I could take a novel and convert its sentences to bag-of-words vectors.
[See this tutorial http:…
-
Hi,
I am using function `fviz_pca_ind`, and was wondering if there's way to specify not showing the group legend. As advised in issue https://github.com/kassambara/factoextra/issues/20, I tried `s…
-
Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/Seven595/ADM
Confirm the following by editing eac…
-
Hello,
I'd like to create an ordination plot based on the samples in my main experiment group, and then add to it the samples from a control group. I don't want the control samples to influence the o…
-
Hi Seurat team,
I noticed a difference between when I run FeaturePlot() and VlnPlot() without specifying that the slot/layer to use should be 'scale.data' (as in the first example below), vs. when …
-
- [x] I am sure this issue is not simply a general python programming problem
(if so, please google the answers).
- [x] I have searched github issues and confirm this issue has not reported pr…
-
I have two data sets of single-cell transcriptomes: snrna and sprna, where snrna was obtained under Seurat v4.3 and sprna was obtained under Seurat v5. I use the same code, as shown below.
```
W3.2…