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Hello, I would like to ask, what are the differences between the individual analysis in the STAARpipeline (analysis centered on a single locus variable) and the traditional GWAS analysis using the pli…
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Hello, I would like to request if you could create dbSNP154.GRCh38/dbSNP154.GRCh37 or provide guidance to built dbSNP154. GWAS Catalogue uses dbSNP154 version and this could be helpful for help workin…
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NBDCヒトデータベースにおけるdatasetの定義を確認する必要がある。またjga-studyとjga-datasetなど同一データベースにおける異なるID体型が混在しているので、方針を確認する。
例)
* JGAS000585
* JGAS000585 (Data addition)
* JGAD000687
* E-GEAD-635
* DRA016800
* hum035…
tfuji updated
1 month ago
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Hi, there:
please see the screenshot below. I previously processed 124 GWAS. Now just added 1 new GWAS. But `pheweb augment-phenos` takes hours, Completed 31 tasks in 95 minutes.
Why pheweb …
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when use code to liftover to hg38,
here is my code:
python /public/home/qihangm/sp.twas/summary-gwas-imputation-master/src/gwas_parsing.py \
-gwas_file /public/home/qihangm/sp.twas/gwas/cp/finnge…
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I've followed previous advice of running the single trait MTAG to work out the factor that the MTAG beta's and SE's need to be multiplied by to compare to the GWAS results.
The mean factor (MTAG_beta…
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DR failed in slim solr indexer step with errors that are related to getting trait info from ols
@karatugo to add code to log the EFO causing the issue and bypass it.
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Hello MetaXcan
I am trying to use SPrediXcan.py with the mashr Brain_Cortex training model db file, covariance file txt.gz, and GWAS summary data(chromosomes information compiled in just one text fi…
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Hi,
I previously already used **Pheweb** to process some large GWAS files. Now my project manager decided to **rename** some of the input GWAS files, for example, renaming a **LDL.gwas.gz** file…
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Hi,
Thanks for the invaluable tools and tutorial resources you provided!
I am currently working with imputed data from the UK Biobank, and I have encountered a challenge regarding the storage si…