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## Specialized transition matrix types
- Classical, dense, transition matrix (`Array{Float64,2}`)
- Left-right
- Sparse
Implementations of forward/backward/MLE dependent on the transition matr…
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Hi ,
I am getting the following error in step-"Initial run of the polyGembler haplotype phasing" when I use '-G' for genotype. I am using the 'gembler_daemon.sh' script to run the job. I'd really …
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Hi,
I tried to build database for my VNTRs, the following error occurred:
Traceback (most recent call last):
File "/rd1/laixh/soft/anaconda2/envs/snakemake/bin/advntr", line 33, in
sys.exit…
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Currently, we have [kinetic change point](https://duderstadt-lab.github.io/mars-docs/docs/kcp/) integrated into Mars. This is great for looking at rate changes in pair-wise linear motion. There is an …
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Hi, I am trying to infer and analyze hidden states in neuron spikings with ZIP-HMM uninitialized and fit the model to data.
`model = DenseHMM([ZeroInflated(Poisson()), ZeroInflated(Poisson()), ZeroIn…
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When calling the bake() method (even at the beginning of the notebook) I get the following error message: (in the HMM warmup project, it works fine)
------------------------------------------------…
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- [x] think about design matrix - get distribution of each of the evaluated metrics before deciding which HMM to use
- [x] preprocess new data types
- [x] Use HMM without any specific emission model? …
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First of all, sorry about all the issues raised - just hoping to help as much as possible, as I appreciate all the work put into building this brilliant package, so it's all in a spirit of appreciatio…
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## Description
Currently we only allow users to pass a fix transition matrix when calling any one of three functions for Hidden Markov Models:
* `hmm_marginal`
* `hmm_hidden_state_prob`
* `hmm_lat…
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Dear Torsten,
not sure if this has anything to do with you directly, but I just noticed that the barrnap-v0.9 version packaged for Debian/Ubuntu (installed via `apt`) is shipped with what appears t…