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Hello,
I'm trying to run MUFFIN's class-annot steps and running into some trouble. It seems like I'm not structuring the .csv properly.
My command is as follows:
`nextflow -log /home/ubuntu/MUF…
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With the current way of doing the qc in tbprofiler, we would likely weed out quite a few false minority variants if we add `--calling_params '-q 15'` to the `tb-profiler profile` command. This would r…
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Hi,
I am opening this issue because I experienced a wired Samtools behavior: when I try to convert a bam to a cram, I get a cram slightly bigger than the original bam. The following is the code I r…
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#### Are you using the latest version of [samtools](https://github.com/samtools/samtools/releases/latest) and [HTSlib](https://github.com/samtools/htslib/releases/latest)? If not, please specify.
1.1…
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Hi,
I used hifisam to assemble two haplotype genomes in trio-binning mode based on ont, hifi, and Illumina DNA reads from parents. The following are my commands. I have two questions.
1) Which o…
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### Description of the bug
Hi,
I use Illumina paired end libraries (10 GB per library) and I got an error in megahit. I executed `nextflow run nf-core/mag --input samples.csv --outdir /home/s-junguy…
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Hi,
it would be great if this package could be compatible with Guix, as this can help to make the work more reproducible.. are you planning this? because we use Guix, it would take too much effort t…
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Hi, I've got an error in rule prepare_binning_files. I use Illumina paired end libraries (10 GB per library) and this is my submission script:
#!/bin/bash
#SBATCH --cpus-per-task=16
#SBATCH --time=…
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SpecHLA publication suggests that full-length typing outperforms exon typing. I am wondering if the reconstructed gene sequences/full-length (-u 0) are better than the reconstructed exon sequences (-u…