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RVanDamme
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MUFFIN
hybrid assembly and differential binning workflow for metagenomics, transcriptomics and pathway analysis
https://rvandamme.github.io/MUFFIN_Documentation/#introduction
GNU General Public License v3.0
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Muffin_v2
#45
Avanbelle
closed
1 month ago
4
pankegg_bin (parser_bin) running too long
#44
yotsa
closed
1 month ago
0
is long-read only possible?
#43
AstrobioMike
closed
1 month ago
0
Muffin run ends without any error message but not with the proper outputs
#42
chayanroy
closed
1 month ago
1
Update conda.config
#41
RVanDamme
closed
1 year ago
0
Problem creating environment and Error executing process 'spades (1)'
#40
vicho33
closed
1 month ago
0
Conda location and singularity cpu
#39
almutwerner
closed
1 month ago
0
Error while running pipeline
#38
aditi48n
closed
1 month ago
6
Update sourmashgetdatabase.nf
#37
LWilfart
closed
1 year ago
0
Update conda.config Tools
#36
LWilfart
closed
1 year ago
0
MUFFIN class-annot feedback: no such file: /home/ubuntu/null
#35
dzolier
closed
1 month ago
4
trying to run own data after test run OK
#34
drelo
closed
1 month ago
5
MUFFIN does not complete all the steps
#33
H1889
closed
1 month ago
25
MUFFIN regexp to detect reads in directory
#32
rhysnewell
closed
1 month ago
1
February 17 update and metawrap error
#31
H1889
closed
1 month ago
6
February 16 2022 version error
#30
H1889
closed
2 years ago
2
MAXBIN2 RUNNING ONLY IN ONE CORE?
#29
H1889
closed
2 years ago
2
CPU ERROR
#28
H1889
closed
2 years ago
8
Failure to download README from osf.io
#27
rhysnewell
closed
2 years ago
3
Due to Spades bug #863, conda.config does not work for MUFFIN
#26
marade
closed
1 month ago
1
MUFFIN only works with NXF_VER=20.10.0 and will not proceed after Medaka step
#25
marade
closed
2 years ago
9
Nextflow not continuing past MUFFIN launch
#24
dzolier
closed
2 years ago
4
Database location
#23
khoriba
closed
1 month ago
0
sourmash_checkm_parser TypeError: 'newline' is an invalid keyword argument for this function
#22
ivelsko
closed
2 years ago
1
speed up of eggnog
#21
replikation
closed
1 month ago
0
Use of PacBio longreads ?
#20
pbaCamille
closed
2 years ago
1
Running binning only with pre-made assembly
#19
ghost
closed
1 month ago
1
Question on assembly strategy
#18
mherold1
closed
1 month ago
1
Report "unused reads" back to the user
#17
replikation
closed
1 month ago
1
ImportError: this version of pandas is incompatible with numpy < 1.12.0
#16
CeciliaDeng
closed
1 month ago
3
NO VALID EXECUTION PROFILE SELECTED, use e.g. [-profile local,docker]
#15
Jessica-2345
closed
3 years ago
11
LWP/Simple.pm is missing
#14
tthye1
closed
3 years ago
2
Nf20.07.1
#13
RVanDamme
closed
3 years ago
0
Muffin20
#12
RVanDamme
closed
3 years ago
1
update docker versions
#11
replikation
closed
3 years ago
1
clean up configs
#10
replikation
closed
3 years ago
1
`checkm_setup_db` steps appears unusually long
#9
RemiMaglione
closed
3 years ago
1
`eggnog_download_db'` failed because `download_eggnog_data.py` not found
#8
RemiMaglione
closed
3 years ago
1
Unicycler and minor change
#7
RemiMaglione
closed
3 years ago
16
Docker test replikation
#6
replikation
closed
4 years ago
0
tested till eggnog
#5
replikation
closed
4 years ago
2
checkM database handling via docker
#4
replikation
closed
4 years ago
1
Step 1 to 2/3 channel handling
#3
RVanDamme
closed
4 years ago
0
ToDo tracklist
#2
replikation
closed
3 years ago
1
Step3 to master merge
#1
RVanDamme
closed
4 years ago
0