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Dear authors,
I am trying to run the ABC model using publicly available ATACseq, H3K27ac, H3K27ac HiChIP and my own expression data, but am running into a lot of issues and was wondering if you cou…
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Hello,
i was wandering if it would be possible to provide documentation on how tu use dMaSIF.
What command needs to be performed for example to run main_inference.py site for PLD1 (4ZQK.pdb)
…
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This issue is to collect challenges and confusion that new team members face as they follow the steps in the contribution guide so that we can improve the document.
One major issue is that "Step 3:…
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### Background
Open-source Protein Interaction Platform (openPIP) as a customizable web portal designed to host experimental PPI maps. No coding skills are required to set up and customize the databa…
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https://mp.weixin.qq.com/s/qDF1VavcsItO0qHgx-jOXg
ixxmu updated
3 months ago
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Article title "NOC1 is a direct MYC target, and its protein interactome dissects its activity in controlling nucleolar function" should return [PubMed record](https://pubmed.ncbi.nlm.nih.gov/38213308/…
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Conversely, the
PHO genes are hyperrepressed in cells bearing loss-of-function mutations
in components of the 3′-processing/termination machinery
(12, 13).
- [x] curated. A. M. Sanchez, S. Shuma…
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Hi Rahul, many thanks for your quick responses! I would like to recreate the processed files myself, by using the scripts in data/script. Also, I want to create for msi and hetionet a triplet file wit…
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I have a simulated two-column edge matrix with 100000 rows. It's intended to be representative of the [Human Reference Interactome](http://interactome.baderlab.org/) in its size. The task I'm attempti…
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Hi,
Thanks for this really great paper. I would like to run the network expansion and module detection and trait correlations on my own set of genes. When I look at the script Script_1_SEED.r , th…