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This is my command line and relative error plus my sessionInfo
```
stringtie_de_novo_Quant
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I tried to run it with the DEXSeq parameter and got the following error.
Step 1 of 3 : Detecting isoform switches...
error: matrix multiplication: incompatible matrix dimensions: 56x30 and 0x1
…
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Hi @kvittingseerup
I have successfully used the tool in bulk tissue samples. Now I am planning to try it on single cell sequencing. have you tried it in house? Considering there are thousands of …
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What I am seeing in the ioe file (generated from hg19 gtf file) is that Alternative First exons account for 42% of the splicing events. Skipped event exons follow at 23%. I was under the assumption t…
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Hi
This is not a bug report or any issue with the codebase here.
This is more of a "HOWTO" question: I see your pipeline has bunch of RScripts and I assume you are running your pipeline with Nex…
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I suspect that this is actually user error, not an issue, but as I am still new to programming, I don't know the preferred place to post this.
I am starting with a Salmon quantified RNA-seq dataset…
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Hi,
When I tried to identify Isoform Switches, I used Isoform Switches via DEXSeq. But I got this error: "Error in isoformSwitchTestDEXSeq(switchAnalyzeRlist = exampleSwitchListFiltered, :
co…
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I am trying to figure out how to use IsoformSwitchAnalyzeR to quantify isoform abundance and identify isoform switches with data from Salmon quantification. I'm really stuck at the very beginning. I…
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Hi,
I just saw this super nice package that I will try for sure.
Don't hate me, but maybe it would be good to fix the typos in the tittle:
```
Title: An R package to Identify, Annotate and …