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Here is my running code:
```
time metawrap quant_bins -b temp/bin_refinement2/ref4/metawrap_70_5_bins/ \
-t 48 -o temp/bin_arg/quant/summer \
-a result/megahit/summer.contigs.fa \
tem…
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### Description of bug
When I run `metaspades.py` via a conda environment, the process will run but no contig files are created. I seem to get all the intermediate files. I was able to assemble suc…
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For canonical k mers, which ATCG combination is dropped?
For example, AAA, TTT, the kmc will dump all TTT counting to AAA or vice versa?
What's the rule? Thanks!
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Dear Brant,
I am working with a set of 67 samples in Linux. When I ran phyluce_assembly_assemblo_spades, computer worked for a whole week and I got an output for 65 samples (folders with contigs.fas…
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Hi,
I'm getting an error when trying to blastn sequences vs NT DB. I also tried to just run the last convertalis command on a different computer and saw it crashed after getting to ~2TB of RAM usag…
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# Autometa Methods Documentation Video Series
This is a series of videos with voiceovers visualizing describing Autometa methods with visual aides generated by [manim](https://www.manim.community/)…
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After counting k-mers for each control sample, we should investigate composing the counttables into a single nodetable before running `kevlar novel`. This should a couple of synergistic benefits.
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Dear developers of KMC,
It would be great if there was an independent interface for building KMC database similarly to reading implemented in kmc_api/kmc_file.
- [ ] API for counting k-mers
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Example:
- `{batch}.samples.tsv`
Example from previous pipelines:
```
sample asm_fn asm_ns asm_cl asm_fa_bytes pre_fn pre_ns pre_cl pre_kmers pre_fa_bytes baps_order mashtree_order…
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Hi.
I follow instructions to install AFLAP on my computer and try to run fastq data with approximately 560 genotyped animals belonging to 40 families. I used below code to run
t_n044@lsp-bioinf…