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### # Downloads input files:
### #Known variant file
`[wget ftp://ftp.ensembl.org/pub/release-99/variation/gvf/homo_sapiens/homo_sapiens-chr18.gvf.gz' -O homo_sapiens.vcf.gz](url)`
# # Select varia…
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I've been trying to build our cloud-native pipelines using trioCanu, and think this might be useful for the canu developers.
Show below is the resource usage during `splitHaplotype`.
![splitHaplot…
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Hi I am running a large dolphin feces nanopore sequencing fastq file and I am running into memory issues I think...
How much memory should I ask for to run this sample? Thanks! Katie
Canu v2.2
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Hi,
I am attempting to run Canu in my institution's HPC. My commond is following:
```
./canu -p ecoli411 -d /home/project/P20240403/anaylsis/test2 genomeSize=4.8m -pacbio /home/project/P2
024040…
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Hello,
I am using Canu for the first time, I am trying to assemble a fish genome (de novo) in a grid. However it keeps giving me the error rc=256. First I used canu inside a singularity container an…
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Great program. Thanks. I was testing a different program (https://github.com/tischulz1/plast) that makes use of bifrost and ended up with an odd error. Could you please take a look?
Here is my odd …
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Hi all,
I'm trying to run Canu (v2.2) on some old raw CLR reads. I am running the jobs on a linux server with SLURM. I created an interactive SLURM session and then submitted my Canu line:
```
…
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Dear Finch team,
Just to confirm that Finch use exactly the bottom-k implementation of MinHash (use only one hash function), not the expensive original MinHash (use many hash functions).
Thanks,…
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## Describe the desired feature/enhancement
Some suggestions for how to improve the megamash algorithm
### Describe the solution you'd like
Just throwing a thread here to brainstorm ideas and fix…
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Hello Otmar,
I have a question on J_N and J_P, since both are scale-invariant, J_N is the normalized weighted jaccard similarity, is J_p (assume P-minhash is used) closer to J (unweighted, no-norma…