onecodex finch-rs issues

onecodex / finch-rs

A genomic minhashing implementation in Rust

https://www.onecodex.com

MIT License

93 stars 8 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

Fix newlines in sketch kmers

#70 audy closed 10 months ago
0
Increase capnproto size

#69 audy opened 10 months ago
0
bottom-k implementation

#68 jianshu93 closed 9 months ago
2
Fix for Dockerfile smell DL3025

#67 grosa1 closed 1 year ago
1
Next version

#66 Keats closed 1 year ago
0
Fix bug with reverse complement not being normalized.

#65 donovan-h-parks opened 1 year ago
0
Avoid creating an array for histogram

#64 Keats closed 1 year ago
0
u64 integer with u16 length limit results in large files having vector overflow error

#63 NateBaileyTempus closed 1 year ago
4
Make numpy an optional dependency

#62 jairideout closed 1 year ago
0
Borrow sequence records

#61 Keats closed 1 year ago
0
Bump lib version to 0.4.3

#60 jairideout closed 2 years ago
0
Add no_strict parameter to Python bindings

#59 jairideout closed 2 years ago
0
Bump finch_cli to 0.4.1

#58 jairideout closed 2 years ago
0
Bump library to 0.4.2

#57 jairideout closed 2 years ago
0
Bump dependencies

#56 jairideout closed 2 years ago
0
Bump crossbeam-utils from 0.8.1 to 0.8.8

#55 dependabot[bot] closed 2 years ago
1
Bump crossbeam-deque from 0.8.0 to 0.8.1

#54 dependabot[bot] closed 2 years ago
0
support for aminio acid proteome

#53 jianshu93 opened 3 years ago
0
Separate CLI and lib

#52 Keats closed 3 years ago
4
Cleanup + update

#51 Keats closed 3 years ago
0
Add license scan report and status

#50 fossabot closed 3 years ago
1
Build binary wheels for Python 3.8 and 3.9 on release

#49 boydgreenfield opened 4 years ago
0
split finch-rs into library and binary

#48 maxbla closed 3 years ago
0
Make raw_distance function commutative

#47 maxbla closed 4 years ago
7
Remove rust-toolchain and mess with CI

#46 maxbla closed 4 years ago
1
Transitive dependency memoffset won't build on old nightly

#45 maxbla closed 4 years ago
1
circleci -> gh actions

#44 Keats closed 4 years ago
0
Tree command

#43 bovee opened 4 years ago
1
Add Dockerfile to build Finch binary

#42 polyatail closed 4 years ago
0
Better distances using counts

#41 bovee opened 4 years ago
1
Generate python documentation

#40 bovee opened 4 years ago
0
Build python library/wheels

#39 bovee closed 4 years ago
1
Enable code coverage tracking

#38 bovee opened 5 years ago
0
multi-threaded mash_files

#37 wwood closed 4 years ago
7
[WIP] Expose scaled minhash in the CLI

#36 luizirber closed 4 years ago
1
[WIP] Hash schemes

#35 bovee closed 4 years ago
0
Update circle CI to 2.0 config

#34 luizirber closed 5 years ago
0
Add Finch to AFproject.org

#33 boasvdp opened 5 years ago
1
Optimize loading sketch file

#32 dtolnay closed 5 years ago
2
Attempting Excessive Memory Allocation

#31 dcdanko closed 5 years ago
9
Version 0.2.0

#30 bovee closed 5 years ago
0
Improve filtering API

#29 bovee opened 5 years ago
0
dist takes parameters that are silently ignored when passed sketch files

#28 hgbrian closed 4 years ago
2
Allow different sketches in the same multisketch to have different kmer sizes

#27 bovee opened 5 years ago
0
Other Hash Functions

#26 bovee opened 6 years ago
9
Error when kmer count >65535 (per kmer)

#25 bovee closed 4 years ago
2
`finch` query/reference selection is confusing

#24 bovee closed 4 years ago
1
Internal refactoring and support for binary Mash format

#23 bovee closed 6 years ago
0
Now in brew

#22 tseemann closed 6 years ago
1
Compatibility with Mash `msh` format

#21 bovee closed 6 years ago
0