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pmelsted
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bifrost
Bifrost: Highly parallel construction and indexing of colored and compacted de Bruijn graphs
BSD 2-Clause "Simplified" License
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Feature request: Represent assembly gaps using Jump records
#85
bredeson
closed
1 month ago
1
query output file query_name is incorrect
#84
bredeson
opened
1 month ago
0
Feature request: Output to stdout for Bifrost query/suppression of non-matching query sequences
#83
cschu
opened
2 months ago
0
Sync with upstream libpopcnt.h as of the 2.6 release.
#82
brad0
opened
4 months ago
1
Fix strerror_r() usage for *BSD OS's
#81
brad0
opened
4 months ago
2
writing graph index hangs in 1.3.0 upward
#80
vpbrendel
closed
4 months ago
5
[Q] pruning of an existing .gfa
#79
Louis-MG
closed
8 months ago
1
Fixes for compilation issues on mac systems
#78
pmelsted
closed
8 months ago
0
Compilation fails on Mac OSX
#77
lrvdijk
closed
9 months ago
6
Minor patch for FreeBSD
#76
outpaddling
closed
8 months ago
1
Build failure with clang 14
#75
outpaddling
closed
9 months ago
1
Unitigs with no color
#74
aryakaul
closed
9 months ago
2
unitigs with no colors
#73
hangsuUNC
opened
11 months ago
10
SNP calling on Bifrost output
#72
JensUweUlrich
closed
1 year ago
2
update zstr to avoid compilation error
#71
Yenaled
opened
1 year ago
0
Mention Memory Requirements in README
#70
omerXfaruq
opened
1 year ago
0
This soft can assembly mtDNA ?
#69
deyuanyang
closed
1 year ago
1
Using CompactedDBG cpp object to fetch name of contig in GFA
#68
rlorigro
opened
1 year ago
0
[Q] Query sequences that are kmers of length 31
#67
Louis-MG
closed
10 months ago
5
Locally installed executable cannot find shared library
#66
rlorigro
closed
1 year ago
5
Number of FASTA/FASTQ files in input can indeed be 0
#65
Krannich479
closed
1 year ago
5
Missing k-mers?
#64
rwittler
closed
1 year ago
6
Indexing 200K assemblies
#63
davidmaimoun
closed
2 years ago
4
stack smashing detected
#62
khodor14
closed
2 years ago
5
Fixed undefined behaviour for KmerIterator on a sequence starting with N
#61
kreldjarn
closed
2 years ago
1
KmerIterator undefined behaviour if string starts with N
#60
kreldjarn
closed
2 years ago
2
Make install error: Missing File
#59
FKCodebase
closed
2 years ago
1
Installation from source fails
#58
h836472
closed
2 years ago
3
undefined symbol: KmerIterator::operator*() when using API with conda
#57
samhorsfield96
closed
2 years ago
4
Houston, I have a problem²
#56
LucasBarbosaRocha
closed
2 years ago
2
[Q] What is the optimal to get a list of neighbors restricted to a color?
#55
lrvdijk
opened
2 years ago
0
bad alloc in v1.0.5 and latest master
#54
ptrebert
closed
2 years ago
2
Houston, I have a problem
#53
LucasBarbosaRocha
closed
3 years ago
2
Warning
#52
LucasBarbosaRocha
closed
9 months ago
4
Correct conda installation
#51
jamshed
closed
3 years ago
1
[feature request] dumping color file into parsable format
#50
damiankao
closed
10 months ago
4
Update a k-mer
#49
LucasBarbosaRocha
closed
2 years ago
1
Invalid edge reported for self-complemental nodes
#48
sebschmi
opened
3 years ago
2
Are even kmers supported?
#47
sebschmi
closed
3 years ago
1
Fix memory error in multithreaded query
#46
sebschmi
closed
3 years ago
1
Invalid pointer in free during multithreaded query
#45
sebschmi
closed
3 years ago
0
conda installation command fix
#44
alevar
closed
2 years ago
0
Installation command conda
#43
Waschina
closed
2 years ago
1
How is unitig sequence strandedness decided
#42
samhorsfield96
closed
2 years ago
1
overflow gfa link output at k128
#41
kevyin
closed
2 years ago
2
Color graph based on records rather than input files
#40
GuillaumeHolley
opened
3 years ago
0
Query a colored graph for presence/absence of queries in each color of the graph
#39
ggautreau
closed
3 years ago
3
Adding "<" operator to unitigIterator class and "[]" operator to CompactedDBG class
#38
samhorsfield96
opened
3 years ago
1
GFA output: DA field meaning
#37
tillbaar
closed
3 years ago
1
[Feature request] Programatically add sequence to a colored compacted De Bruijn graph
#36
lrvdijk
opened
3 years ago
0
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