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I still feel it's objectively better, but it's a pile of work.
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Hi,
I have built a custom database for kraken2 with default parameters.
When i align 16S nanopore reads with kraken2 I have the following lines in the output file.
生存予測の向上を目的として、PET/CT画像から抽出される手作業による放射線画像特徴量(HRF)と深層学習による放射線画像特徴量(DRF)をハイブリッド機…
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@romainsacchi recently added https://github.com/brightway-lca/brightway-documentation/commit/6745788c701fd89ed4c8f7cf9636e2103a646aa1 a helpful diagram:
We could just add it to the [Software Fr…
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It would be nice to be able to select a few tips and determine the LCA. In an empire plot, this can be particularly useful to help identify a portion of the tree driving a partitioning pattern.
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- [ ] ? [2406. Divide Intervals Into Minimum Number of G](https://leetcode.com/problems/divide-intervals-into-minimum-number-of-groups/?envType=daily-question&envId=2024-10-12)
- [x] 🟨 🌟[200. Number …
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This milestone covers any additions to IF or IF plugins in order to be able to create a manifest file to asses the IF lifecycle
tbc but top level aims are:
- create manifest that does a LCA for …
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When trying to run
```
sourmash lca gather -o SRR1976948_lca_gather.csv SRR1976948.sig genbank-k31.lca.json
```
this is the result:
```
(dib_rotation) nkavaler@bm16:~$ sourmash lca gather -o S…
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Hi all,
thanks for providing this great package and making the application of bias-adjusted LCA/LPA available as open source!
I was wondering if there is a possibility to calculate predicted pro…
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## Expected Behavior
Taxonomy assignment of viral OTU sequences (nucleotide) using the 2bLCA method against a custom formatted amino acid database from IMG/VR
## Current Behavior
The LCA step die…