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Hi,i wanted to know could i filter the SNP with LD to reduce the huge inputfile. Does the way have a effect on the result? (more than 110M snp) Thanks.
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Hi, I am running SNPHylo as such:
$ ./snphylo.sh -v vcf_file
Upon the execution, I have this warnings and message error as following:
"Start to remove low quality data.
Warning: There we…
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Hi, i have the same problem.
I want to perform rare variants (MAF < 1%) analysis in Regenie, and have tried many times to follow your earlier advice to others, but still encounter the s…
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The locus drawer will open from the number field in the `credible set size` column, for both GWAS and molQTLs widget.
if credible sets size is 7, the drawer will contain 7 rows for 7 variants in the …
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Hi Dr Anderson,
I have a dataset with 2422 SNPs generated from ddRADseq across 104 individuals. I have removed linked loci but I do have a considerable amount of missing data (11.5%). I'm getting the…
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Hello Eric,
My name is Jeronymo and I'd like to estimate Ne using strataG similarly to NeEstimator. My dataset shows 6.3% of missing, represent one panmictic population, and when I used the functio…
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## 1. Bug description
When running finemap_loci on my 11 topSNPs, it proceeds successfully with 4 of them but fails for the other 7. The error (when it occurs) appears to happen during Step 2: Extr…
dym22 updated
4 months ago
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## Questions
### Natural selection
1. Contrast the definitions of Melthusian fitness and Darwinian fitness. Compare their solutions under a simple selection pressure if you can. [answer](https…
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The ontology group would like list use cases for GO. This would help ensure that all these use cases are possible when we make decisions about the ontology.
- Functional classification
- Gene enr…
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Does anyone know why this error occurs and how to fix it?
Traceback (most recent call last):
File "/home/lilab/software/mixer-master/precimed/mixer.py", line 23, in
args.func(args)
File "…