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Dear all, Dear @lucacozzuto,
I am happy to inform that sample comparison Tombo model worked perfectly on our data set.
However, we also need to use `tombo detect_modifications alternative_model`…
hqs10 updated
2 years ago
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I have been trying to run drummer.py to identigy the m6A modifications in my direct RNA sequecing reads of honey bees. However, when I run this code:
module load python3
module load anaconda3/202…
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I'm trying to use EpiNano to identify the m6A modification. However, when I run Epinano_Current with this code:
module load samtools/1.10
export PATH=$PATH:/projects/dsn001/camila/nanopolish/nanop…
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[1] "G4Q" …
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We are interested in using the EpiNano developed in your group to analyze m6A modifications via RNA direct sequencing. The aim is to confirm the m6A modifications on RNAs transcribed from a single gen…
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PMID:31913360 and PMID:32637152 describe a U2 snRNA m6A methyltransferase activity for the human and fly METTLL4 proteins, respectively.
Human METTL4 catalyzes Am to m6Am of U2 snRNA, whereas the f…
sjm41 updated
3 years ago
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Hi,
1) In _EpiNano/models_ folder are currently 7 models, which ones should be used for RNA m6A prediction if one does not have a WT vs KO setup and only wants to check 1 sample for modifications?
…
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I felt confused about the result of sample Epinanov1.2.
I reversed the two input files( -k wt and -w ko ) in Epinano_DiffErr.R and got similar results. Similar results are obtained by using the mode…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/kandarpRJ/epidecodeR
Confirm the following by edi…
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Hi Eva,
I am currently using Nanopore to sequence RNA from patients' samples and try to investigate RNA m6a methylation in cancers using Epinano. I have read the publication of Epinano on Nature
C…