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Without docker, the environment is self configured,
ubuntu18.04.6 pcl1.9.1 opencv 2.4.13.6 VTK 8.2.0 eigen3.3.9 pangolin 0.6
The compilation passes, but an error is reported when running:“**Segment…
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**Is your feature request related to a problem? Please describe.**
I am looking into setting up a way to collaboratively annotate and segment sMRI. The idea is that we can invite specific people via …
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Dear all,
in the Stats folder after running FastSurfer I have the following files:
```
-rw-r--r-- 1 stn stn 12703 Jul 13 19:25 aseg+DKT.stats
-rw-r--r-- 1 stn stn 9736 Jul 14 04:17 aseg.presu…
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First processing done:
[sct_run_batch_log.txt](https://github.com/ivadomed/model_seg_ms_mp2rage/files/7694467/sct_run_batch_log.txt)
Identified problematic segmentations: saved as **qc_fail.yml** …
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Hi there,
After reading your BioArxiv paper I was excited to try out the technique on our microscopy data. I was able to dissect and reassemble the relevant parts of one of your tutorials to try o…
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it's a good job,and I saw in your paper that you obtained the segmentation results of DOTA 2.0 version. Can I use this code to obtain the segmentation results of DOTA 1.0?
look forward to you reply,
…
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The data is stored in `duke/mri/basel/4031_MRI_T2_MRAGE_24patients_CGM` and the segmentations are stored in `duke/mri/basel/4031_Segmentations_T2_MPRAGE_24patients_CGM`
The steps are the following:
…
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Related to this [comment](https://github.com/ivadomed/ms-lesion-agnostic/issues/7#issuecomment-1966846443).
Canproco modifications :
- Pushed 33 SC segmentations made with the CanProCo region-ba…
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From Kyle's comment here:
https://docs.google.com/document/d/1NFWOPu-yP1u0O62YUX4w5IrzwaRwaMozwdJPhJ32XLA/edit?disco=AAABF6huiJ0
To do a proper comparison, I would need to draw an angled rectangle…
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**Describe the bug**
Uploading my own T1-CE .nii and performing pre-operative segmentation yields an error "No radiological volume for {'timestamp': 0, 'sequence': 'T1-CE', 'labels': None, 'space': {…