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The MC2 Center data model does not currently enable assay-specific metadata to be recorded. Adding these models is a critical part of supporting data sharing and reuse. Potential models to add were or…
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Enhanced natural organic matter workflow
The natural organic matter (NOM) direct infusion Fourier transform mass spectrometry (DI FT-MS)
workflow has been applied to diverse environmental samples. How…
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So this is quite unfortunate. Roughly every time it runs, it creates some duplicates.
```
$ bash no-dupes.sh
# Checking eu
Error! Duplicates!
4 "/Metabolomics/Msi analyte distribution/DO…
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I am encountering an issue with the detection of iodine-containing compounds using MFAssignR. Despite the presence of iodine in my samples, the library fails to identify any iodine-containing molecula…
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E.g. for breast, colorectal, and ovarian, add "mass spectrometry based proteomics data from CPTAC [citation]."
jjgao updated
3 years ago
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**Topic name:** < Lipidomics >
**Short description:** < the systematic identification and characterization of cellular lipid molecular species, lipid derivatives, and downstream lipidome interacti…
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Sparse array could be both computational and space-efficient when storing mask images. I wonder if it's possible to support sparse array in NGFF spec.
Just for reference scverse/spatialdata#691
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I am currently trying to import mass spec imaging data by converting this to a .h5 to mimic the Visium file formatting. I have reached a point where the error is: ValueError: Versions older than V3 ar…
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Include Data source -> 'Experiment' -> 'Experiment type' + 'Experiment technique'.
@brissebrat Can you include the list of experiment techniques from the LADP database?
These should be include…
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List relevant bibliography (report DOI + relevant sections) in a new Dendron note (for example projects.commons-public.microcosmics.bibliography)
# Soil metabolomics
## Sample prepraration
…