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Hi, thanks for the great work!
When I tried to reproduce some results, I found that the /datasets/4i/ directory is unavailable. In fact, I follow your guidelines step by step. First I download the …
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### Issue description
When the only difference between a synonym and its category name is case, the `synonyms` document is saved to Elasticsearch without a `tokencount` field.
> **ESTIMATE** TBD
…
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Hi @steverozen,
Thanks a lot for the very useful package.
I was running msighdp on our data, however I got the following error which I'm unable to debug. Therefore, I was wondering if you could …
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From the paper _Perturbation biology nominates upstream–downstream drug combinations in RAF inhibitor resistant melanoma cells_, Korkut et al. eLife 2015;4:e04640, huge parameter space, many condition…
LoosC updated
4 years ago
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Currently `reference_genome` (https://github.com/hammerlab/biokepi/blob/master/src/lib/reference_genome.ml#L3) only contains a small number of human references:
``` ocaml
type specification =
[`B3…
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Ben has a new assay that can measure expression levels for 100 - 1k transcripts with very low input material and cost. He also has some micro-dissection technology to sample a small piece of tissue fr…
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整合了TCGA和nonPCAWG的数据来源,癌症分类有66种,需要处理转化一下,看看各自的亚型等等。
```
> pancancer_WES_SBS$Cancer.Types[!duplicated(pancancer_WES_SBS$Cancer.Types)]
[1] AML Adrenal-neoplasm Bil…
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Thanks you for this greate tool to access GWAS catalog datasets. I want to download the top associations SNPs from GWAS catalog, and convert it to a SNP variant list like bim file,
![image](https…
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Hi, I am very interested in this research of yours, the code idea is very novel. However, when I reproduce the code, I always meet the same problem, when training the second subgraph and the subsequen…
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Hi there, I downloaded your classifier and applied it on an annotated melanoma whole slide image. The classifier predicted all detected cells as "lymphocytes". Could you please upload a detailed doc…