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Hello,
Thank you for developing kmc.
I ran into an issue today before I realized I was using the wrong flag.
When using -fa instead of -fm, kmc (v3.2.1) runs smoothly but obviously produces inc…
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Hello again!
I have another issue. It's repeatable - I have 3 different datasets failing with the same error.
Here is the error message from the same dataset as in #28
MBG: src/UnitigResolver.…
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Per: https://github.com/ctb/2022-sourmash-sens-spec/blob/main/fracminhash-runs-simulate.ipynb
```
in M=100 k-mers, p of finding at least one hash is: 63.43% - scaled=100
in M=200 k-mers, p of fin…
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Dear developers,
I would like to run snapper on a set of reference contigs (not whole genomes). I have native and wildtype data.
```
single_to_multi_fast5 -i "${nativeFAST5}_single" -s "${nativeF…
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I created a pangenome graph using pggb, resulting in gfa and og files. I now wish to perform some mappings to the graph and have a few questions:
1. From the pggb documentation I understand that the …
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Hello everyone,
My team and I are analyzing short read metagenome data from human respiratory samples using KrakenUniq with the MicrobialDB database (available from https://benlangmead.github.io/aws…
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Hi Team,
I am working on a project wherein I have to count k-mers from genome assemblies. I, therefore, have to run this across multiple files. As per the documentation (txt: A plain text file with…
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Should we update the default tracks for Ebola, SARS, and MERS? Currently, only the gene annotations and GC percentage tracks are loaded into view.
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Are k-mers with ambiguous nucleotides (e.g. N) included in the sketch or are they thrown out?
I would imagine the best strategy is to have Mash filter these kmers out. I suppose it could be handle…
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`MBG bioconda 1.0.16`
Hi,
- I am testing MBG on an organellar genome and noticed the results can change if you run the program multiple times. I couldn't find a seed parameter in the options to …