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There are some issues with this training that I collect here to fix step-by-step.
* In the preprocessing part, all fastq outputs go into multiQC, but since multiQC only shows one output for identical…
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We plan to expand our catalogs of tutorials for whole-genome microbiome data analysis.
Here are some ideas we will implement:
- Expand the introduction slide deck to add more overview of the diffe…
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Montana correctly pointed out in [this comment](https://github.com/microbiomedata/issues/issues/413#issuecomment-2067398721) that our implementation of long-read metagenomics was somewhat incomplete. …
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**Submitter Name and ORCiD**
Amy Zimmerman
**Submission ID**
1d87912e-9c22-4717-acf3-483a9335e770
**Have data already been generated for your study?**
No
**PI Name and ORCiD**
Amy Zimmerm…
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Currently we generate the mapping files for an amplicon run with the `amplicon-pooling.ipynb` notebook, however this should be changed to work the same was as with metagenomics runs. Namely using the …
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For a real data set, we need to run preProcess across every library, then gather them together to run pairwise-distance and heatmap (and various other tasks, eg pooling methylation then generating Big…
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Hello,
First of all - thank you, @mr-c, for the response to my previous problem!
I've been further trying to run emg workflows, specifically emg-pipeline-v4-paired.cwl, on my machine. I have run…
aperz updated
5 years ago
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Hi,
When I try to run the following command, I don't get the metabolic pathway for the ko2name comment, they are all NA My is data is bacterial metagenomics, how is this going to be solved?
data
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A PSV/PSE/PSC/etc version that can handle really big phylogenies. In the past I have tried to calculate PSV on a phylogeny with several hundred thousand tips, but R will give a 'cannot allocate vector…
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Update the frontend for the logs (samples logs deployment):
- [x] Split header, navigation etc into components
- [x] Refactor view logic out of templates, into service
- [x] Add mock API data for…