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daijiang
/
phyr
Functions for phylogenetic analyses
https://daijiang.github.io/phyr/
GNU General Public License v3.0
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changing the credible interval
#90
juliettejrubin
opened
1 month ago
0
formula clean
#89
daijiang
opened
2 months ago
0
Critical bug in pglmm_compare
#88
j-iranzo
closed
1 year ago
3
fixes #86 - DHARMa support is working (though not yet working for zer…
#87
rdinnager
closed
1 year ago
1
DHARMa support
#86
daijiang
closed
1 year ago
1
Unable to install package
#85
halabikeren
opened
1 year ago
0
bayes = T, random terms within random terms
#84
arives
opened
1 year ago
0
logLik is not in print.communityPGLMM when family != gaussian
#83
arives
opened
1 year ago
1
Removed unused code from cor_phylo.*
#82
lucasnell
closed
1 year ago
0
Use futures for cor_phylo bootstrap multithreading
#81
lucasnell
closed
1 year ago
2
cor_phylo: fixed bootstrapping, removed warning
#80
lucasnell
closed
1 year ago
2
cor_phylo: removed annoying warnings from arma::solve
#79
lucasnell
closed
1 year ago
0
Gh actions
#78
rdinnager
closed
1 year ago
2
DHARMa simulate residuals issue
#77
hhollandmoritz
closed
1 year ago
2
Support `emmeans`
#76
rdinnager
opened
2 years ago
1
Migrate testing from travis to github actions?
#75
rdinnager
opened
2 years ago
1
fixes #73, issue with translating formula
#74
rdinnager
closed
2 years ago
0
Problem with pglmm Bayes=TRUE model syntax
#73
Flaiba
opened
2 years ago
14
Predicted values for Poisson distributed data
#72
ammoncorl
opened
2 years ago
3
different estimates from glmer and pglmm
#71
heliconius-maps
opened
2 years ago
1
need for logLik for family=Poisson
#70
arives
opened
2 years ago
3
Extracting random effect values
#69
GitTFJ
opened
3 years ago
0
Three/Four level nested random effects
#68
GitTFJ
opened
3 years ago
1
Fixed memory error in rcond()
#67
lucasnell
closed
3 years ago
0
standardize vcv
#66
daijiang
opened
3 years ago
1
"undefined column selected" with pglmm_plot_ranef
#65
jusinowicz
opened
3 years ago
2
communityPGLMM error
#64
ebechtold
opened
3 years ago
6
covariance matrix invertion by cholesky
#63
lucas-jardim
opened
3 years ago
1
fixed bug where tibbles were not properly handled.
#62
rdinnager
closed
3 years ago
0
added developmental version number to DESCRIPTION
#61
rdinnager
closed
3 years ago
0
Ancestral
#60
rdinnager
closed
3 years ago
0
Fixed issue that 4 element list and 1 element list approaches to spec…
#59
rdinnager
closed
3 years ago
0
Inla nested list
#58
daijiang
closed
3 years ago
0
update pkgdown site
#57
daijiang
closed
4 years ago
0
New vignette
#56
daijiang
closed
4 years ago
0
New vignette
#55
daijiang
closed
4 years ago
0
New vignette
#54
daijiang
closed
4 years ago
0
To do
#53
daijiang
opened
4 years ago
0
New vignette
#52
rdinnager
closed
4 years ago
0
pcd: remove site with no sp after match with phy
#51
daijiang
closed
4 years ago
0
predicted values with INLA
#50
arives
opened
4 years ago
4
pcd function not working with ultrametric tree
#49
graciellehigino
closed
4 years ago
2
(1|obs) for zero-inflated distributions
#48
arives
opened
4 years ago
0
random effect of clade for species in a phylo tree
#47
Jigyasa3
opened
4 years ago
1
New style of functions
#46
daijiang
closed
4 years ago
0
Fix cp valgrind2
#45
daijiang
closed
4 years ago
0
Fix cp valgrind
#44
lucasnell
closed
4 years ago
0
Create CODE_OF_CONDUCT.md
#43
rdinnager
closed
4 years ago
2
Increased code coverage in cor_phylo, fixed error in refit_boots
#42
lucasnell
closed
5 years ago
0
New additions and some fixes to cor_phylo
#41
lucasnell
closed
5 years ago
0
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