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These are all "mitochondrial membrane" in eukaryotes and "plasma membrane" in bacteria
Rule: don't transfer compartments from bacteria/archaea to eukaryotes
Atp5 F1-FO ATP synthase delta subunit…
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Hello, I want to use novoplsty to assemble numts, but the result I got did not store numts file, the following is my configuration file and the result I got, the version I used is NOVOPlasty4.3.5.pl, …
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**Question or Expected behavior**
I have generated genome assemblies for two different species of butterfly. The assembly sizes are ~700-800Gb after running purge_dups. In both assemblies I find that…
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`prokka --kingdom mito` sets the genetic code to metazoa mt (5) and enables the metazoan mitochondrial tRNA mode of Aragron `aragorn -mt`. Is `-kingdom mito` intended specifically for metazoa, or shou…
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mitochondrial
https://www.pombase.org/results/from/id/7cc11705-5a33-41b3-ad04-78c16a437be3
but maybe do all
https://www.pombase.org/term/GO:0006631
it may be that certain localizations are mi…
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See also issue#1137
We need to review the structure of genomic measurement terms. Currently in EFO there are a number of terms such as mitochondrial DNA measurement EFO:0006312, mitochondrial heterop…
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Hello @kimrutherford and @ValWood, first congrats on managing to pass the submission pipeline!
I noticed that the new submission no longer includes the mitochondrial chromosome sequence. I know tha…
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#### Current behavior:
27 genes are discovered to be uncorrelated with their corresponding reactions in `Carnitine shuttle`.
| Gene | UniProtID | Reaction | GPR | Correlation| Manually check…
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Bio.Algorithms.Translation.Codons contains the standard genetic code. Should there be a second codon map for mitochondrial genes? AGA and AGG are terminating codons in mitochondria, and UGA codes for …
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These are all MITOCHONDRIAL large subunit
Img1 IEA with PTHR33343:SF1
mrp11 IEA with PTHR11560:SF8 GO_REF:0000118
mrp7 IEA with PTHR15893:SF0 GO_REF:0000118
mrpl1 IEA with PTHR36427:SF3 GO_REF…