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Hello,
Thanks for your work on moving alphafold to Colab. Since [AlphaFold3](https://github.com/google-deepmind/alphafold3) is open sourced now, do you plan to add it to colabfold?
Thanks!
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## Expected Behavior
I'm having issues installing plass using all options. I work in CentOS 8 x86_64
## Current Behavior
1. Install from bioconda appears to succeed but then the plass executable …
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## Expected Behavior
The analysis finished in minutes on MMSeq2 MSA server using colabfold
## Current Behavior
Local mmseqs always paused for hours without generating outputs
## Steps to Repro…
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## Expected Behavior
Taxonomy database created based on a `seqdb` created from UniProt sequences
## Current Behavior
Program crashed with `core dumped` error and reports `Error: createbintaxo…
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## Expected Behavior
After using “mmseqs easy-linclust” clustering, the retained sequence is non-redundant
## Current Behavior
After using “mmseqs easy-linclust” clustering, he retained seque…
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### Description of the bug
`colabfold_local` should work offline as the msa is build by the `MMSEQS_COLABFOLDSEARCH` process and passed to the `COLABFOLD_BATCH` process downstream.
Here is the log:
…
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## Expected Behavior
Compiling the code using cmake
## Current Behavior
Not compiling successfully
*stdin:*
```
$ cmake -DCMAKE_BUILD_TYPE=RELEASE -DZLIB_LIBRARY=/home/flejzerowicz/softs/zli…
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Dear OpenFold community,
I was encountering an error when running inference using precomputed alignments.
I precomputed the alignments by:
```
python3 scripts/precompute_alignments_mmseqs.p…
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Hi! Appreciate I'm maybe running a bit full-steam ahead here and asking about software that's not published - I was looking at running vamb, and noticed there is an option to use taxonomy information …
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More a question than an issue. I'm in the purchasing phase for a local mmseqs server and vendor asks for CPU specs etc. etc.
From the Readme I know:
(2) single query searches require the full inde…