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- How synaptic transmission works and what model we are using?
- What ion channel models are we using or want to use?
- Gap junctions
- Chemical synaptic channels
- What are the passive proper…
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Currently, when points are sparse in a morphology, voxelizing it, might leave in between voxels empty, depending on dynamically determined grid size: e.g. if we end up with voxels of 10um, and 2 point…
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We have many new terms for neuronal morphologies in the process of being added to PATO: https://github.com/pato-ontology/pato/issues/created_by/shawntanzk
We need to define a set of grouping classe…
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```
(b4py9) robin@LAPTOP-JF6T3PSU:~/git/bsb-hdf5$ python -m unittest test.test_interface.TestPlacementSet.test_label_filter
/home/robin/.pyenv/versions/b4py9/lib/python3.9/site-packages/mpilock/__in…
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I'm running the bmtk [chapter 4 tutorial](https://github.com/AllenInstitute/bmtk/blob/b40ff493b493422d350fd9775405af618a69900f/docs/tutorial/04_multi_pop.ipynb) and using a data reporting method from …
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### Feature you'd like to see:
The manual ROIs in the GUI are currently limited to elliptical shapes. It would be beneficial to have the ability to draw manual ROIs (like we can in CellPose).
#…
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In the current temporary implementation if `get_region_of_interest` of intersectional connectivity strategies we only consider the extension of morphologies as they occur in the MR, and ignore the fac…
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The purpose of this test will be to check the consistency of the instance catalog creation and image generation with the input quantities in the protoDC2 catalog. This can be done by generating a smal…
EiffL updated
6 years ago
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At the moment, if a network has many Components of the same cell ComponentType but simply rotated at different angles, one must create a new population for each of these Components since `instance` al…
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`make[4]: *** No rule to make target 'tokeniser-disamb-gt-desc.accented.pmhfst', needed by 'all-am'. Stop.`