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After recently updating my package from 1.3.3 to 1.4.0, the set_size.angles parameter is not working.
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Discussion of input/output in new version.
What formats would you like to see supported?
Current proposal:
* Sequence formats: FASTA
Does anyone want or need FASTQ support? No one's ever …
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Hi.
segment when cufflinks with -mask-file
version:2.2.2
```
(gdb) where
#6 0x00007ff7680e0d4d in rewind () from /lib64/libc.so.6
#7 0x00000000005430be in read_transcripts (f=f@entry=0xd…
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**What is the SO term name and accession?**
gRNA_gene (SO:0001264)
**Describe what you would like to change.**
Current def is "A noncoding RNA that guides the insertion or deletion of uridine res…
sjm41 updated
2 years ago
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Can someone tell me which assumption convert_gff3_to_ncbi_tbl makes on the formatting of the names? Apparently ours miss something:
```
python3 gff/convert_gff3_to_ncbi_tbl.py -i ../juncus.fasta.…
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When validating SBML files from biomodels, we get the following warning whenever a species is annotated as messenger RNA:
- The value of the 'sboTerm' attribute on a <species> is expected to …
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Im trying to convert a gff file into gff so that it could be fed into the HISAT2, StringTie, ballgown pipeline. I have installed gffread and manage to see output after ./gffread -h.
However, when t…
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I suggest adding an option for distance-based filtering in the `closest` function. Currently, `closest` only allows selecting the number of closest intervals to report with the `k` parameter. It would…
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The human entry was recently updated with two new reactions working in snRNA and snoRNA, respectively. These reactions replaced RHEA:67620 (mRNA) with RHEA:78471 and RHEA:78475. RHEA:676…
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One question that's come up in lecture is what are the 'fundamental'/'objective' properties of a graph node or edge that we can use to define and construct a brain graph. Do we care about morphology, …
whock updated
9 years ago