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The inspect command reports the container used during a pipeline execution, for example:
```
» nextflow inspect . -profile wave
{
"processes": [
{
"name": "RNASEQ:INDE…
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Hi,
I am using bcbio since a few years and it always worked nicely but last week after upgrading the tool I run a variant calling pipeline and got an error when running multiqc. I don't think it's …
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It seems that falco doesn't handle reverse-complemented read sequences in mapped BAM files correctly.
Specifically, when flag bit 0x04 of a read is not set (i.e. when the read is mapped), falco shoul…
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Any plans to add a `MultiQC` module for `seqkit`? It would be quite usefull for the `seqkit stats` function.
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assembly metrics with QUASt
multiQC too?
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`samtools rmdup` is deprecated and has been replaced by `samtools markdup`. If possible we should extend MultiQC to include markdup (or replace)
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### Description of the bug
STAR produces 2 alignment report files: pairedLog.final.out and singleLog.final.out. When MultiQC is generating the report, instead of combining them, seems like it randoml…
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Every now and then, someone runs MultiQC on two sets of files and then wants to generate a combined report from those two runs without accessing the original log files. This isn't really possible curr…
ewels updated
2 weeks ago
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currently not rendered & doesn't seem to link to proper multiqc or describe how to use it:
suggestions?
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### Description of bug
When I am inside a GitPod container which has Docker preinstalled and I attempt to pull the MultiQC Docker Image: `quay.io/biocontainers/multiqc:1.19--pyhdfd78af_0` or `quay…