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Issue reported by email from [Scott Brown](http://www.holtlab.ca/personnel.html#scottb):
>I have a question regarding the protein sequence output from Isovar. I have seen multiple cases where th…
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Hi everyone,
Im trying to train a new model with my own data. Step 1 (computing embeddings) and 2 (zero-shot) are running perfectly, but step 3 is complaining about missing embeddings:
`Error l…
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Thank you very much for providing this amazing resource!
I would appreciate your help:
1. Would you please direct me to the ProteinNPT predictions for each mutant in the random CV scheme?
2. Were…
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Darren Creek and his lab have carried out metabolomics work on several OSM compounds (see #469 for background). Darren constructed a powerpoint of the results (below) and provided the following commen…
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Hi there,
Thank you so much for this awesome paper!
I am wondering how do you implement in silico mutagenesis analysis?
Is there any materials that I can look into?
Thank you so much!
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Hi developer,
Thanks you for your program. It is quite easy to use and generate valuable results.
I want to get help with the de novo protein structure prediction using PSIPRED. I always got th…
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Hi, I'm working on a project to extract features from PAAD patients from the ICGC database for neoantigen immunogenicity prediction in ML. This project follows the steps taken by the model creators. I…
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I installed treeomics as directed, and it works wonderfully for example 1 and 3. However, example 2 fails with the following error:
$ treeomics -r input/Bashashati2013/Case5_mutant_reads.txt -s in…
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Hi, I have been trying to run antigen garnish for a while with your testdata and now it seems to run fine with parallel and netMHC. The issue is that in the folder as e.g. ag_f236b988a09e438ea2 it doe…
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**Date**: Feb 8th
**Time**: 2pm UK time ([other times](https://www.timeanddate.com/worldclock/meetingdetails.html?year=2022&month=2&day=8&hour=14&min=0&sec=0&p1=43&p2=136&p3=37&p4=771&p5=240&p6=5&p7=…