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Quick question here regarding extending TrackSig beyond the hg19 reference build. In src/getMutationTypes.pl, line 16 has the explicit delineation of using hg19:
my %fastaHandles = ("path" => "annota…
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Dear @huebschm ,
I want to cite your software package _YAPSA_ for my paper. But since the journal of interest requires me to include **the paper or preprint of the software package** into the refer…
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https://doi.org/10.1101/103374
> Translation initiation is a key step in the regulation of gene expression. In addition to the annotated translation initiation sites (TISs), the translation process…
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See also #28 (comparing clusters to Allen cell types)
- Nature Biotech paper (2018): [Dimensionality reduction for visualizing single-cell data using UMAP)](https://www.semanticscholar.org/paper/Di…
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Hi, Im having some issues with the above command. Hope you can help. Any ideas you had would be very useful.
When running the following command
> denovo_signatures NMF::nmf - 20/20 fit(s) threw …
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Hi there! When I ran the bayesNMF code provided in your directory using a simulated cancer mutational catalog to en, I have encountered the following problem after the 30X optimization has finnished:
…
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Hi there,
I do not know if I understand but you can create as many signatures as you set in the parameter `num.sign`. I am following the tutorial described in [https://cran.r-project.org/web/packa…
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Hello, and thank you for your tool!
I am able to run CNSignatures with default signatures for a dataset of 74 ultra low-pass WGS (albeit only when I change the distribution from Gaussian to Poisson…
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Dear @xqzou,
Thanks for this very promising tool.
I was wondering if hg38 can be supported for MMRDetect?
The paper mentions that you used hg19 for all analyses, and I can see hg19-specific code sn…
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