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Polarity information is usually present in imzML files, either in the ``, e.g.
```
```
or per-spectrum, e.g.
```
```
If the polarity is p…
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Hi yufree,
I am still trying to repeat your PMDDA workflow. And I have some question about the data used in this analysis.
For the raw data of samples, nist1950, you have five mzML files (for descri…
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### Basic information
* My operating system and version: Windows 10 Pro Education 22H2, OS Build 19045.4355
* My mzmine version: 4.0.8.
### What happened
I am processing approx. 1300 mzml fi…
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Hej, we have a new MS instrument and it is a TIMS-TOF. So the mzML files look a bit different from our normal QE data (in DDA mode at least), since multiple MS2 scans need combining and summing and wh…
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If refine mzML crashes, there will a problem where refined mzml db entries are not checked and the set of them is marked as "Incomplete" in the interface, which (currently) blocks the analysis. Resolv…
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When attempting to reference a directory such as:
mzML_folder = quilt+s3://interline-proteomics-analysis#package=TechDev/DIANN_APMS_demo@1357028e5391f8153647d13771d221536f90d1699b99e913bd29162379ff…
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- Currently the streamlit implementation only supports MGF files as spectra input
- Theoretically fragannot and fraggraph support input of mzML
- _theoretically_ because not everything works depen…
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Hi Vadim,
I recently forgot to destagger my raw files during mzml conversion. I fixed this now and both results seem to be very comparable when it comes to IDs.
Is there a difference for DIA-NN …
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Hi there,
I've noticed that Thermo .Raw files have (in a binary format), useful metadata like the sequence (.sld) information associated with the sample injection, and the used instrument method, a…
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I am trying to convert a .cdf file from a Shimadzu machine to .mzml to use in GNPS, and when I try, it says that exporting to .mzml requires the openchrom parser, but when you use openchrom it says it…