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it seems that proteowizard is producing multiple files when only one is expected. with wiff2, it is expected that it produces multiple files depending on the number of acquisitions, however, it is is …
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File format conversion can be made with the compass software, see https://github.com/rformassspectrometry/RforMassSpectrometry.org/issues/18#issuecomment-1834408893
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Dear OptiLCMS developpers,
I was trying to use MetaboAnalystR package and encountered a something which is obviously a bug. I was running the `PerformParamsOptimization` function and encountered th…
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A user reported that her GNPS analysis failed to run on PALS Viewer.
```
Thanks for offering to take a look at our issue!
I'm attaching the metadata here. This is the GNPS link: https://gnps.ucsd…
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How would you prepare diaPASEF data to use with this pipeline? What are the steps to prepare the raw data acquired with diaPASEF into the necessary mzXML file type? We already have a spectral library …
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Hello, I was trying to cluster mzXML files from https://massive.ucsd.edu/ProteoSAFe/dataset.jsp?task=88a7dfeeecb74131a6d6bfb7a9db0a46 in WSL:Ubuntu-22.04 but it does not seem to recognize any spectra.…
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mzspec:MSV000086838:peak/ST001652/10_D6_CT1.mzXML
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I tried this out with a set of .mzXML files and the workflow completed. I didn't see any output files. Does the workflow just renumber the spectra in the original file? If you want to take a look at a…
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Could you please provide a method to get type of spectra in pyopenms when the information is stored in the mzXML at the same level as msLevel:
I see that there is a method in C
SpectrumSettings::…