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### Description of the bug
I think the `$defs` instead of `definitions` is causing the issue as it was fixed after the replacement.
### Command used and terminal output
_No response_
### Relevant…
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## New feature (docs)
I would like to request documentation describing how remote files are downloaded/staged in Nextflow.
## Usage scenario
Projects that require fetching large amounts of d…
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Hi
Hi
I am running RepeatMaker nextflow using a custom TE library on a genome assembly. All processes worked successfully unless the last process (combineRMAlignOutput) with the following error (I…
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### Ask away!
作者您好,在我已经下载了wf-pore-c.sif情况下,我想使用singularity去运行wf-pore-c.sif的时候依旧会出现报错,申请需要拉去网络需求,然后就会终止我的任务。但是我已经在.bashrc的环境中设置了:
export NXF_SINGULARITY_CACHEDIR=/home/dingyuanhao/zxl_software/wf-por…
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After few years of successful run, some upgrades can be done for workflow modernisation:
In order of priority:
- [ ] 1. Bring tertiary analysis to Nextflow, for a unified workflow
1.1 New…
pmb59 updated
2 weeks ago
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None of the Nextflow extension features are working.
I'm getting the following Runtime Status:
Re-installing the extension does not help.
I'm using `v1.0.0` of the extension on a MacOS `…
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### Description of the bug
I get the error
```
ERROR ~ Cannot invoke method endsWith() on null object
…
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## Bug report
_[Reported](https://nextflow.slack.com/archives/C02T98A23U7/p1730104468259449) in the nextflow-help Slack channel._
Processes that need to access data in several containers receive a…
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Implement the nextflow module for #7
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## Bug report
- Despite editing an eval script, a cached version of the process will be used under certain circumstances
### Expected behavior and actual behavior
- Expected: editing an eval…