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Hello Filipe,
I got this script that has been running forever now (142hours now).
the input is a beagle file coming from low-coverage whole-genome sequencing
#PBS -l nodes=2:ppn=40
#PBS -l wa…
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I would like to know if its possible to run ngsTools on P. falciparum parasite ILLUMINA data. Thanks
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Hello,
I'm running into an error while formatting the glf file to run ngsDist.
-> Printing at chr: scaffold1|size15271748 pos:3044951 chunknumber 60900 contains 50 sites
-> Printing at chr: …
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Hello @mfumagalli . I tried following the tutorial given for ngsTools and it could not run. Below is the command I used
$ANGSD -P 36 -b ALL.bamlist -ref $REF -out Results/ALL.qc -uniqueOnly 1 -remo…
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Hi. I installed the ngsTools on my ubuntu machine using the make command. I run the make test and some of the tests failed. Is there anything to be concerned about ? Below is the log
_make[1]: Ent…
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Hi , I tried installing ngsTools and I got this error. Please advice
No package 'gsl' found
make[1]: Entering directory `/home/ha/apps/bioinfo/ngsTools/ngsTools/ngsDist'
g++ -I./shared -O3 -Wall…
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Hello,
I'm trying to use ngsStat by doing:
`./ngsStat -npop 1 -postfiles file.saf -nind 11 -outfile file.stat`
where my .saf (out of angsd) looks like:
```
NC_007897.1 2 0.000000 …
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Deployed SalmonTE on OSX Cathalina as follows.
~~~
% R --version
R version 4.0.3 (2020-10-10) -- "Bunny-Wunnies Freak Out"
% python -V
Python 3.8.2
% pip install --upgrade pip
% pip install doc…
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### Links
- container collection: https://singularity-hub.org/collections/4586
- GitHub repository or recipe file: github.com/cokelaer/damona
### Version of Singularity
This is about the…
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Hello!
I've been trying to run gatb-minia-pipeline and although it seems to be producing an assembly (a file called `*_final.contigs.fa), i've been getting the following error right at the end of t…