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Hi, I tried different configs with the network and realized for a lot of time the mask prediction would lose the mask on the image boundary. My mask usually would be a rectangular shape lying on sever…
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Hi,
Thank for making nQuire. I've installed and run the program successfully (and easily, great job!). I'm testing nQuire on a mixed bacterial sample of somewhat known composition. In this case, th…
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Hi,
I am trying to train a 3d model from my own images on a z stack.
I am doing 2 different training using different parameters on the same dataset (still learning ).
However I still get the me…
Nal44 updated
4 years ago
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Hi Alex,
I hope to run a STARsolo on a BAM file that has non-conventional SAM attributes for cell barcode and UMI sequence. Here, instead of CB and UB, they are CB:Z and UB:Z, respectively.
Spec…
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Hi all,
I've been very excited to get to apply this slightly intimidating project to some new data, but despite all of the great examples of impressive results I've seen out there, I'm really strug…
dluks updated
11 months ago
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Hello,
I'm opening this issue here since this still seems to be the most popular Boomerang repository.
For the past months I have been refactoring/writing tests/fixing bugs in my fork of Boomera…
ceeac updated
6 years ago
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Hi there,
When I segment polyonal cells using Cellpose, I found some single pixel outlier.
Like in this labeled image, that pixel has the same label ID that the brown big cell to the right. When …
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Hello, thank you very much for providing such a great tool.
My data consists of 10x single-cell sequencing of 12 different regions of a transplanted human heart sample, which has been working in the…
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Now I have two types of data, one is benign thyroid data, the other is malignant thyroid data. They are labeled as mask maps. A map only represents one lesion. Do I need to classify my data according …
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For some experiments, I'd like to setup `encoders/extra/{vision,audio,...}/`
with specialized encoders for multiple modalities.
There existed special repos as
- https://github.com/htm-community…