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the goal for obographs has always been to make the common 99% cases easy but to have a way to do the last 1%
for any untranslatable axiom, we should have a json representation. this should be gener…
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After fixing the other two bugs in the json file, the data still wouldn't load.
I'm not there yet, but the process runs longer after removing references to concepts that don't exist. The references …
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## Overview
HPO is a separate ticket and will likely spearhead this work, but here's a ticket for the rest of them. Mondo, and what is used in OBO2OMOP.
SO for the Genomics WG (edit)
## Sub-task li…
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## Overview
In `omim.sssom.tsv`, there is this weird extra line break before the closing single quotation mark, appearing as `# '`. IDK what's causing it.
`omim.sssom.tsv` subsection:
```tsv
…
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Phenio contains some relationships like http://purl.obolibrary.org/obo/emapa#is_a which is really confusing. These should be removed prior to release.
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## Overview
I tried to convert HPO to FHIR using `semsql` as an intermediary. However, after about 40 minutes, I decided to give up and switch to Obographs for speed. I think it took about 10 minutes…
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Many developers have written redundant obo parsers in various languages. Due to the details of the spec it is difficult to write a robust parser. OWL is very difficult to work with, many people use th…
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```
def parse_from(self, handle, threads=None):
# Load the OBO graph into a syntax tree using fastobo
> doc = fastobo.load_graph(handle).compact_ids()
E File "", line 1
…
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There is no obvious way to distinguish between OPs and APs in the current version of OBO graphs.
```js
{'id': 'http://purl.obolibrary.org/obo/fbbt#IUPAC_NAME',
'lbl': 'IUPAC NAME',
'typ…
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- [x] Add solr docker image to the docker-compose
- [ ] Do a 2 SOLR tutorials like https://www.youtube.com/watch?v=v4GNOnvdgtY (didnt check this)
- [ ] Use sssom CLI to turn mapping sets to JSON
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