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Wanted to give the new libraries a whirl and figured I would make a couple of notes as I go along. I will try to resolve these issues / features this weekend or something as many of them are "optional…
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I have a metamorph nd acquisition (a nd file and "many" tiff files: 27 positions x 55 time points, each of the 512x1024 16-bit pixels -- overall ~1.5Gb) on a network drive.
Downloading the acquisitio…
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It seems to be working and reading the metadata, but it's throwing out:
`Key not found: list index out of range
Key not found: list index out of range
key not found list index out of range
Key not…
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Hi Folks,
I am new to this and would like to try to test and see if this workflow would work for stitching + align + fusing a large multipoint Nikon .nd2 file. My datasets are multipoint acquisition…
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Ideally bioio should support the latest numpy.
I checked with the [ruff rule for numpy 2.0 migration](https://numpy.org/devdocs/numpy_2_0_migration_guide.html#ruff-plugin), which is not (cannot pos…
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### Description
Add OME-TIFF metadata IO to the ITK TIFF ImageIO. OME-TIFF is the most standard TIFF metadata format in adopted by microscopy community.
### Expected behavior
[OME-TIFF](https…
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I tried to run the preprocessing notebooks on example data from Marco Grillo (Leica 20x organoid dataset). The mipping ran successfully (the expected folders are produced with mipped images), but the …
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Hi,
Is there any ongoing work to add JPEG XL compression support for the OME-TIFF (ome.tif) format. In my experience, I’ve achieved about a 50% size reduction with this reasonable settings: {“level…
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Hi,
valis-wsi is wonderful! Thank you very much for providing the community with this extremely useful tool.
Unfortunately, we are experiencing problems when trying to read a `.qptiff` file wit…
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Dear Developer,
I am just curious about the inputs, well, I have multiple individual channel Tiffs, how can I merge them together into one OME.TIFF as the required input for this pipeline running.
…