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After Kestrel and HttpClient would be supporting Activity subscription usingActivityListener, we should be able to remove DiagnosticsObserversInitializer.cs
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Batch conversion in CLI mode needs to set context: with or without math generation.
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### Contact Details
_No response_
### Location
runBiosimulations
### What happened?
I uploaded
[Figure5.omex.zip](https://github.com/biosimulations/biosimulations/files/10198550/Figure5.omex.zi…
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Overridden volume fraction parameter for distributed compartment is not recognized and becomes orphan upon math regeneration.
Example published model biomodel_55178308, multiple simulations (includ…
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### Background
- Previously, the java codebase in the VCell CLI project interacted with the biosimulators_utils python library through starting a new system process to call and execute a specific pyt…
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This information would be useful for composition.
- Languages with units
- [ ] SBML -- SBML has some support for units, but many models don't use this.
- Languages with implicit units
- [ ]…
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### Contact Details
_No response_
### Location
runBiosimulations
### What happened?
Tried the latest version of a biomodels OMEX file; got this error. Last time it was a SED-ML validation error,…
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Typos can result in namespace URIs that lack trailing `#` or `/`. It would be helpful to catch these mistakes.
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In some cases, a user may prefer using the webform to submit simulations in bulk, and repeatedly use the webform. Due to the defaults and the introspection of the project that can automatically selec…